Index

A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | X

A

addChildren() (in module inference.engine)
addEvidenceVertex() (network.groundBN.GBNGraph method)
addExistParents() (in module inference.engine)
addParent() (network.vertices.GBNvertex method)
addParents() (in module inference.engine)
addReference() (network.vertices.ReferenceVertex method)
addReferenceVertex() (network.groundBN.GBNGraph method)
addSamplingVertex() (network.groundBN.GBNGraph method)
addVertex() (network.groundBN.GBNGraph method)
aggregator (prm.dependency.Dependency attribute)
aggregators (in module data.aggregation)
allByAttribute (network.groundBN.GBNGraph attribute)
analytics (module)
analytics.performance (module)
analytics.visualization (module)
attr (inference.query.Qvariable attribute)
(network.vertices.GBNvertex attribute)
(prm.localdistribution.CPD attribute)
Attribute (class in prm.attribute)
attributeFactory() (in module prm.attribute)
attributes (in module prm.prm)
(prm.relationalschema.Entity attribute)
(prm.relationalschema.Relationship attribute)
autocorrelation() (in module inference.mcmc.posterior)

B

BinaryAttribute (class in prm.attribute)
BLOCKGIBBS (in module inference.mcmc.gibbs)
BURNIN (in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)

C

cardinality (prm.attribute.Attribute attribute)
(prm.attribute.EnumeratedAttribute attribute)
(prm.attribute.IntegerAttribute attribute)
CHAINS (in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)
child (prm.dependency.Dependency attribute)
children (network.vertices.GBNvertex attribute)
CLF (class in inference.mcmc.likelihood)
collectSamples() (in module inference.mcmc.gibbs)
(in module inference.mcmc.posterior)
computeCumulativeDist() (prm.localdistribution.CPDTabular method)
computeERID() (in module network.vertices)
computeID() (in module network.vertices)
computeLikelihood() (inference.mcmc.likelihood.CLF method)
computeLogDists() (prm.localdistribution.CPDTabular method)
computeLogLik() (inference.mcmc.likelihood.CLF method)
computeObjEvidenceLookup() (inference.query.Query method)
computeRefID() (in module network.vertices)
computeSlotChain() (prm.dependency.Dependency method)
computeTrainingSets() (in module data.datainterface)
condAttrs (inference.mcmc.likelihood.CLF attribute)
conditionalAssignment() (inference.mcmc.likelihood.CLF method)
conditionalDist() (network.vertices.GBNvertex method)
(prm.localdistribution.CPDTabular method)
configure() (in module data.datainterface)
(in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)
configureConstraint() (prm.dependency.Dependency method)
constraint (inference.query.ObjsVariable attribute)
(prm.dependency.Dependency attribute)
CPD (class in prm.localdistribution)
cpd (inference.mcmc.likelihood.Likelihood attribute)
CPD (prm.attribute.Attribute attribute)
(prm.attribute.ForeignAttribute attribute)
CPDLearner (class in learners.cpdlearners)
cpdLogMatrix (prm.localdistribution.CPDTabular attribute)
cpdMatrix (prm.localdistribution.CPDTabular attribute)
cpdMatrixDim (prm.localdistribution.CPDTabular attribute)
CPDTabular (class in prm.localdistribution)
CPDTabularLearner (class in learners.cpdlearners)
CPDTree (class in prm.localdistribution)
createGraphvizFile() (in module analytics.visualization)
createQvar() (in module inference.query)
createView() (data.sqliteinterface.SQLiteDI method)
cumLogMatrix (prm.localdistribution.CPDTabular attribute)
cumMatrix (prm.localdistribution.CPDTabular attribute)
cumulativeMean() (in module inference.mcmc.posterior)
cur (data.sqliteinterface.SQLiteDI attribute)
currentChain (in module inference.mcmc.posterior)
currentIndex (in module inference.mcmc.posterior)

D

data (module)
data.aggregation (module)
data.datainterface (module)
data.sqliteinterface (module)
data.utils (module)
datainterface (in module prm.prm)
DataInterfaceParser (class in xml_prm.parser)
DataSetInterface (class in data.datainterface)
datasetinterfaceFactory() (in module data.datainterface)
dependencies (in module prm.prm)
dependenciesChild (prm.attribute.Attribute attribute)
dependenciesParent (prm.attribute.Attribute attribute)
Dependency (class in prm.dependency)
dependency (network.vertices.ReferenceVertex attribute)
Discretizer (class in data.utils)
displayCPDs() (in module ui.cmd)
displayGraph() (in module analytics.visualization)
displayTimeAnalysis() (in module analytics.performance)
diType (in module data.datainterface)
domain (prm.attribute.Attribute attribute)
(prm.attribute.EnumeratedAttribute attribute)
(prm.attribute.IntegerAttribute attribute)
DSI (in module data.datainterface)

E

entities (in module prm.prm)
(prm.relationalschema.Relationship attribute)
Entity (class in prm.relationalschema)
EnumeratedAttribute (class in prm.attribute)
ERClass (class in prm.relationalschema)
erClass (inference.query.Qvariable attribute)
(prm.attribute.Attribute attribute)
erID (network.vertices.GBNvertex attribute)
event (inference.query.Query attribute)
(network.vertices.GBNvertex attribute)
eventVertices (network.groundBN.GBNGraph attribute)
evidence (inference.query.Query attribute)
ExistAttribute (class in prm.attribute)
existAttribute (prm.relationalschema.UncertainRelationship attribute)
existParents (network.vertices.ReferenceVertex attribute)

F

fixed (network.vertices.GBNvertex attribute)
foreign (prm.relationalschema.Relationship attribute)
ForeignAttribute (class in prm.attribute)
fromFile() (in module ui.config)
fullname (prm.attribute.Attribute attribute)
(prm.attribute.ForeignAttribute attribute)

G

GBN (in module inference.engine)
GBNGraph (class in network.groundBN)
gbnQ (in module inference.engine)
GBNqueue (class in network.groundBN)
GBNS (in module inference.engine)
GBNvertex (class in network.vertices)
gbnVertexInEvidence() (inference.query.Query method)
gelman_rubin() (in module inference.mcmc.posterior)

H

hasParents (prm.attribute.Attribute attribute)
hasParents() (network.vertices.GBNvertex method)
hidden (prm.attribute.Attribute attribute)
histogramm() (in module inference.mcmc.posterior)

I

ID (network.vertices.GBNvertex attribute)
(prm.attribute.Attribute attribute)
indegree() (network.vertices.GBNvertex method)
indexColumn() (prm.localdistribution.CPDTabular method)
indexing (prm.attribute.Attribute attribute)
indexingCPD() (prm.localdistribution.CPDTabular method)
indexingValue() (prm.attribute.Attribute method)
(prm.attribute.BinaryAttribute method)
(prm.attribute.EnumeratedAttribute method)
(prm.attribute.ExistAttribute method)
(prm.attribute.IntegerAttribute method)
indexRow() (inference.mcmc.likelihood.CLF method)
(prm.localdistribution.CPDTabular method)
inference (module)
inference.engine (module)
inference.mcmc (module)
inference.mcmc.gibbs (module)
inference.mcmc.likelihood (module)
inference.mcmc.mh (module)
inference.mcmc.posterior (module)
inference.query (module)
inferenceAlgo (in module inference.engine)
init() (in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)
initChain() (in module inference.mcmc.posterior)
initCLF() (inference.mcmc.likelihood.CLF method)
initCPD() (prm.localdistribution.CPDTabular method)
initializeVertices() (in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)
initReferenceUncertainty() (in module inference.engine)
IntegerAttribute (class in prm.attribute)
ipythonRunning() (in module ui.cmd)
ipythonShell() (in module ui.cmd)
isEntity() (prm.relationalschema.ERClass method)
isRelationship() (prm.relationalschema.ERClass method)
isUncertainRelationship() (prm.relationalschema.ERClass method)
ITER (in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)

K

k (network.vertices.ReferenceVertex attribute)
(prm.relationalschema.UncertainRelationship attribute)
kAttribute (prm.dependency.UncertainDependency attribute)
kEnitity (prm.relationalschema.UncertainRelationship attribute)

L

learnCPDs() (learners.cpdlearners.CPDTabularLearner method)
learnCPDsCount() (learners.cpdlearners.CPDTabularLearner method)
learnCPDsFull() (learners.cpdlearners.CPDTabularLearner method)
learners (in module probrem)
(module)
learners.cpdlearners (module)
likAttr (inference.mcmc.likelihood.CLF attribute)
Likelihood (class in inference.mcmc.likelihood)
likelihoods (in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)
likLogMatrix (inference.mcmc.likelihood.CLF attribute)
likMatrix (inference.mcmc.likelihood.CLF attribute)
likMatrixDim (inference.mcmc.likelihood.CLF attribute)
loadAttributeObjects() (data.sqliteinterface.SQLiteDI method)
loadAttributeParentObjects() (data.sqliteinterface.SQLiteDI method)
loadCountCPDdata() (data.sqliteinterface.SQLiteDI method)
loadDependencyChildrenObjects() (data.sqliteinterface.SQLiteDI method)
loadDependencyParentObjects() (data.sqliteinterface.SQLiteDI method)
loadDI() (in module ui.config)
loadExistParents() (data.sqliteinterface.SQLiteDI method)
loadFullAggCPDdata() (data.sqliteinterface.SQLiteDI method)
loadFullCPDdata() (data.sqliteinterface.SQLiteDI method)
loadInferenceAlgorithm() (in module ui.config)
loadLearner() (in module ui.config)
loadObjects() (data.sqliteinterface.SQLiteDI method)
loadPRM() (in module ui.config)
LocalDistributionParser (class in xml_prm.parser)
loglikelihood() (learners.cpdlearners.CPDTabularLearner method)
logLikelihood() (network.groundBN.GBNGraph method)
(network.vertices.GBNvertex method)
(prm.localdistribution.CPD method)
(prm.localdistribution.CPDTabular method)

M

mcmcStep() (in module inference.mcmc.mh)
mean() (in module inference.mcmc.posterior)
measurments (in module analytics.performance)

N

name (in module data.datainterface)
(in module prm.prm)
(prm.attribute.Attribute attribute)
(prm.dependency.Dependency attribute)
(prm.relationalschema.Entity attribute)
(prm.relationalschema.Relationship attribute)
nAttribute (prm.dependency.UncertainDependency attribute)
nEnitity (prm.relationalschema.UncertainRelationship attribute)
network (module)
network.groundBN (module)
network.vertices (module)
nIsParent (prm.dependency.UncertainDependency attribute)
NotProbabilisticAttribute (class in prm.attribute)
nTok (prm.relationalschema.UncertainRelationship attribute)

O

obj (network.vertices.GBNvertex attribute)
objEvidenceLookup (inference.query.Query attribute)
objInEvidence() (inference.query.Query method)
objs (inference.query.Qvariable attribute)
ObjsVariable (class in inference.query)
outdegree() (network.vertices.GBNvertex method)

P

parent (prm.dependency.Dependency attribute)
parentAss (network.vertices.GBNvertex attribute)
parentAssignments() (network.vertices.GBNvertex method)
(network.vertices.ReferenceVertex method)
parents (network.vertices.GBNvertex attribute)
(prm.attribute.Attribute attribute)
path (data.sqliteinterface.SQLiteDI attribute)
pk (prm.relationalschema.Entity attribute)
(prm.relationalschema.Relationship attribute)
pk_string (prm.relationalschema.Entity attribute)
(prm.relationalschema.Relationship attribute)
pkValues (inference.query.ObjsVariable attribute)
plotAttrCPD() (in module analytics.visualization)
plotCumulativeMean() (in module inference.mcmc.posterior)
plotCumulativeMeanAllChains() (in module inference.mcmc.posterior)
pop() (network.groundBN.GBNqueue method)
posteriorVertices (in module inference.mcmc.posterior)
prm (module)
prm.attribute (module)
prm.dependency (module)
prm.localdistribution (module)
prm.prm (module)
prm.relationalschema (module)
PRMparser (class in xml_prm.parser)
probabilistic (prm.attribute.Attribute attribute)
(prm.attribute.ForeignAttribute attribute)
(prm.attribute.NotProbabilisticAttribute attribute)
probrem (module)
push() (network.groundBN.GBNqueue method)

Q

Query (class in inference.query)
query (in module inference.engine)
Qvariable (class in inference.query)

R

references (network.vertices.ReferenceVertex attribute)
ReferenceVertex (class in network.vertices)
refGBNvertex (network.vertices.ReferenceVertex attribute)
Relationship (class in prm.relationalschema)
relationship (network.vertices.ReferenceVertex attribute)
relationships (in module prm.prm)
(prm.relationalschema.Entity attribute)
removeAllReferences() (network.vertices.ReferenceVertex method)
removeReference() (network.vertices.ReferenceVertex method)
replaceReference() (network.vertices.ReferenceVertex method)
reset() (in module inference.engine)
resultSet() (data.sqliteinterface.SQLiteDI method)
retrieveRow() (data.sqliteinterface.SQLiteDI method)
reverseIndexRow() (inference.mcmc.likelihood.CLF method)
(prm.localdistribution.CPDTabular method)
run() (in module inference.mcmc.gibbs)
(in module inference.mcmc.mh)
runtime_avg() (in module data.aggregation)
runtime_max() (in module data.aggregation)
runtime_min() (in module data.aggregation)
runtime_mode() (in module data.aggregation)

S

sample() (network.vertices.GBNvertex method)
(prm.localdistribution.CPD method)
(prm.localdistribution.CPDTabular method)
samples (in module inference.mcmc.posterior)
samplingVertices (network.groundBN.GBNGraph attribute)
samplingVerticesByAttribute (network.groundBN.GBNGraph attribute)
save() (prm.localdistribution.CPD method)
(prm.localdistribution.CPDTabular method)
slotchain (prm.dependency.Dependency attribute)
slotchain_attr_string (prm.dependency.Dependency attribute)
slotchain_erclass_exclusive (prm.dependency.Dependency attribute)
slotchain_string (prm.dependency.Dependency attribute)
slotchainToString() (prm.dependency.Dependency method)
SQLite_keyword (in module data.aggregation)
SQLiteDI (class in data.sqliteinterface)

T

target (prm.attribute.ForeignAttribute attribute)
time_analysis() (in module analytics.performance)
topologicalSort() (in module prm.attribute)
topoSortAttributes (in module prm.prm)
trainingSets (in module data.datainterface)
type (prm.attribute.Attribute attribute)
type() (prm.relationalschema.ERClass method)

U

ui (module)
ui.cmd (module)
ui.config (module)
ui.log (module)
UncertainDependency (class in prm.dependency)
UncertainRelationship (class in prm.relationalschema)
uncertainRelationship (prm.dependency.UncertainDependency attribute)
unrollGBN() (in module inference.engine)

V

validateGBN() (in module inference.engine)
value (network.vertices.GBNvertex attribute)

X

xml_prm.parser (module)