Bioinformatics Resources

last updated feb. 9, 2004

0. Index

1.	Bioinfo Education Resources Computer Science for bioinfo Molecular Biology/Chemistry for bioinfo Computational Biology Ron Shamir Courses (fantastic) Bioinfo Basics
2.	Bioinfo Glossary/Definitions
3.	Bioinfo Institutes
4.	Companies/New Technologies
5.	Researchers' Pages
6.	Bioinfo Journal and Book Resources
7.	Bioinfo News
8.	Bioinfo Tools, Data and Resources
9.	Bioinfo Dynamic Programming
10.	Bioinfo Algorithms General Algorithms RNA Secondary Structure Algorithms
11.	Microarrays
12.	Proteomics
13.	Tm
14.	SNPs
15.	Gene Finding with HMMs
16.	Bioinfo Programming/Perl

1. Bioinfo Education Resources

Computer Science for bioinfo

Generalized Suffix Trees for Biological Sequencing

Molecular Biology/Chemistry for bioinfo

Beginner's Guide to Molecular Biology
The Genetic Code (5' -> 3')
Science Graphics Gallery

Computational Biology

Pavel Pevzner's Web Page at UCSD
Zuker - Comp Bio Course

Ron Shamir Courses (fantastic)

Complexity, Spring 2000
Advanced Topics in Graph Algorithms
Algorithms in Molecular Biology, Fall 2000-01

Bioinfo Basics

Biotech: Bioinformatics
Bioinfo Lectures and Algs (good intro to bioinfo)
Other bioinformatics courses and resources

Math/Stats

World of Mathematics one of the best sites on the web - will answer everything math, stats, calc question you could have

2. Bioinfo Glossary/Definitions

PhRMA: Genomics Lexicon the best for descriptions!!!
Glossary of Genetic Terms
Google
Bioinformatics glossary

3. Bioinfo Institutes

EBI, the European Bioinformatics Institute
NCBI HomePage
The Swiss Institute of Bioinformatics Homepage
McGill Centre for Bioinformatics
Institute of Scientific Computing
ETH: Computational Biochemistry Research Group
USC Computational Biology
ISCB Home Page
ETH: Computational Biochemistry Research Group
Cambridge Healthtech Institute great resource for research.
Rensselaer: Bioinfo and Molecular Bio
Canadian Bioinformatics Resource
Genome Quebec

4. Bioinfo Companies/New Technologies

Eragen
Tm Bioscience Corp.
Genometrix
Integrated DNA Technologies
Welcome to Affymetrix

5. Researchers' Pages

Mike Hallett's Page
Home page of Jan Gorodkin
Pavel Pevzner's Web Page at UCSD
Ron Shamir's Home Page
Michael Zuker's Home Page
John SantaLucia's Laboratory Home Page ( thermodynamics )
David Eppstein - Publications

6. Bioinfo Journal and Book Resources

Cell and Molecular Biology Online
National Academy Press
nature biotechnology journal
Journal of Computational Biology

7. Bioinfo News

snowdeal.org
Cambridge Healthtech Institute Reports

8. Bioinfo Tools, Data and Resources

DeCypher Bioinformatics Accelerator Algorithm
LabVelocity: Tools
SDSC Biology Workbench
USC Comp Bio Software
LabVelocity--locate scientific products
The BioOpera Homepage
PSC Job Management Tools
netprlaunch
The RCSB Protein Data Bank
BioMath Biological Calculations
melting temperature code module

9. Bioinfo Dynamic Programming

Systematic Dynamic Programming in Bioinformatics

10. Bioinfo Algorithms

General Algorithms

RNA Secondary Structure Algorithms

ZUKER - Algorithms, thermodynamics and databases
Turner Lab. Free energy and Enthalpy Tables
RNA Secondary Structure

11. Microarrays

Dna Microarray Analysis Software
Affymetrix - Technology: GeneChip
DNA Microarray (Genome Chip)
Combinatorial Design of Universal DNA Tag Systems

12. Proteomics

ExPASy Molecular Biology Server

13. Tm

Oligo Calculator
Alignment of two DNA sequences in base pairing

14. SNPs

Nothing here. Check SNP Summary for a few resources.

15. Gene Finding with HMMs

Nothing here. Check HMM Summary for a few resources.

16. Bioinfo Programming/Perl

bio.perl.org - Main page
bioperl.org - ScriptCentral
Unix Guru - Beginner's Start Page
VI Tutorial
Programming Course - Introduction to Perl
BIO OPERA Documentation

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