Programs by Package
ACeDB - Object-oriented biological database engine
ARTEMIS - DNA sequence annotation
bioLegato - Programmable graphic user interface
BIRCH - Biological Research Computing Hierarchy
CLUSTAL - Multiple sequence alignment
CONSENSUS - Create consensus patterns from unaligned sequences
DIALIGN - Multiple sequence alignment
EBI - Sequence chromatogram viewer
FASTA - Pairwise and global similarity searches
FASTDNAML - Maximum likelihood sequence phylogeny
forester - Programs and API for phylogeny
FSAP - Sequence analysis tools
GCUA - Codon usage analysis
GDE - Genetic Data Environment
GENEPARSER - Parse a DNA sequence into introns and exons
genographer - Score markers from gel images
GRAZ - Management and analysis of microarray data
ISREC - Multiple alignment display
LEASH - client for SeqHound web services
LINDENBAUM - Find subcloning strategies
Mapmaker - Mapping with molecular and phenotypic markers
MCLAMP - Multiple alignment viewer
Mesquite - A modular system for evolutionary analysis
MrBayes - Bayesian inference of phylogeny
MWC - Oligonucleotide Molecular Weight Calculator
myGrid - Web services for biology
NCBI - Database tools - Natl. Ctr. for Biotech. Information
OGMP - Sequence retrieval
OSP - Oligonucleotide design
PHYLIP - Package for Inferring Phylogenies
PRIMER3 - Oligonucleotide design
READSEQ - Sequence format translator
RETICULATE -
Sensen - Visualization and annotation of genomic information
TACG - Restriction digest analysis
TCOFFEE - Multiple sequence alignment
TIGR-TM4 - TIGR Microarray programs
TREETOOL - Phylogenetic tree editor
weighbor - weighted neighbor-joining
XYLEM - Create and manipulate database subsets